The utility of NBS-profiling for characterization of yellow rust resistance in an F6 durum wheat population.
Identifieur interne : 000067 ( Main/Exploration ); précédent : 000066; suivant : 000068The utility of NBS-profiling for characterization of yellow rust resistance in an F6 durum wheat population.
Auteurs : Hale A. Tufan [Turquie] ; Belgin Göçmen Ta Kin ; Ruth Maccormack ; Lesley A. Boyd ; Zeki Kaya ; M. TüretSource :
- Journal of genetics [ 0973-7731 ] ; 2019.
Descripteurs français
- KwdFr :
- Analyse de séquence (MeSH), Basidiomycota (pathogénicité), Cartographie chromosomique (MeSH), Gènes de plante (génétique), Génome végétal (MeSH), Immunité innée (génétique), Immunité innée (immunologie), Locus de caractère quantitatif (MeSH), Maladies des plantes (génétique), Maladies des plantes (immunologie), Maladies des plantes (microbiologie), Marqueurs génétiques (MeSH), Plant (génétique), Résistance à la maladie (génétique), Transcriptome (MeSH), Triticum (génétique), Triticum (immunologie), Triticum (microbiologie).
- MESH :
- génétique : Gènes de plante, Immunité innée, Maladies des plantes, Plant, Résistance à la maladie, Triticum.
- immunologie : Immunité innée, Maladies des plantes, Triticum.
- microbiologie : Maladies des plantes, Triticum.
- pathogénicité : Basidiomycota.
- Analyse de séquence, Cartographie chromosomique, Génome végétal, Locus de caractère quantitatif, Marqueurs génétiques, Transcriptome.
English descriptors
- KwdEn :
- Basidiomycota (pathogenicity), Chromosome Mapping (MeSH), Disease Resistance (genetics), Genes, Plant (genetics), Genetic Markers (MeSH), Genome, Plant (MeSH), Immunity, Innate (genetics), Immunity, Innate (immunology), Plant Diseases (genetics), Plant Diseases (immunology), Plant Diseases (microbiology), Quantitative Trait Loci (MeSH), Seedlings (genetics), Sequence Analysis (MeSH), Transcriptome (MeSH), Triticum (genetics), Triticum (immunology), Triticum (microbiology).
- MESH :
- chemical : Genetic Markers.
- genetics : Disease Resistance, Genes, Plant, Immunity, Innate, Plant Diseases, Seedlings, Triticum.
- immunology : Immunity, Innate, Plant Diseases, Triticum.
- microbiology : Plant Diseases, Triticum.
- pathogenicity : Basidiomycota.
- Chromosome Mapping, Genome, Plant, Quantitative Trait Loci, Sequence Analysis, Transcriptome.
Abstract
Seedling and adult plant (field) resistance to yellow rust in the durum wheat (Triticum turgidum ssp. durum) cross Kunduru-1149 x Cham-1 was characterized using a functionally-targeted DNA marker system, NBS-profiling. Chi-squared analysis indicated a four gene model conferring seedling yellow rust resistance against Puccinia striiformis f. sp. tritici isolate WYR85/22 (virulent on Yr2, Yr6, Yr7 and Yr9). Interval mapping located two QTL for yellow rust resistance on the long arm of chromosome 1B, while Kruskal-Wallis single marker regression identified a number of additional marker loci associated with seedling and/or adult plant, field resistance to yellow rust. These results suggested that much of the yellow rust resistance seen in the field may be due to seedling expressed resistance (R) genes. Characterization of the DNA sequence of three NBS marker loci indicated that all showed significant homology to functionally-characterized R-genes and resistance gene analogues (RGAs), with the greatest homology being NBS-LRR-type R-genes and RGAs from cereal species.
PubMed: 31767816
Affiliations:
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Türet</name></author></analytic><series><title level="j">Journal of genetics</title><idno type="eISSN">0973-7731</idno><imprint><date when="2019" type="published">2019</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Basidiomycota (pathogenicity)</term><term>Chromosome Mapping (MeSH)</term><term>Disease Resistance (genetics)</term><term>Genes, Plant (genetics)</term><term>Genetic Markers (MeSH)</term><term>Genome, Plant (MeSH)</term><term>Immunity, Innate (genetics)</term><term>Immunity, Innate (immunology)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (immunology)</term><term>Plant Diseases (microbiology)</term><term>Quantitative Trait Loci (MeSH)</term><term>Seedlings (genetics)</term><term>Sequence Analysis (MeSH)</term><term>Transcriptome (MeSH)</term><term>Triticum (genetics)</term><term>Triticum (immunology)</term><term>Triticum (microbiology)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de séquence (MeSH)</term><term>Basidiomycota (pathogénicité)</term><term>Cartographie chromosomique (MeSH)</term><term>Gènes de plante (génétique)</term><term>Génome végétal (MeSH)</term><term>Immunité innée (génétique)</term><term>Immunité innée (immunologie)</term><term>Locus de caractère quantitatif (MeSH)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (immunologie)</term><term>Maladies des plantes (microbiologie)</term><term>Marqueurs génétiques (MeSH)</term><term>Plant (génétique)</term><term>Résistance à la maladie (génétique)</term><term>Transcriptome (MeSH)</term><term>Triticum (génétique)</term><term>Triticum (immunologie)</term><term>Triticum (microbiologie)</term></keywords><keywords scheme="MESH" type="chemical" xml:lang="en"><term>Genetic Markers</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Disease Resistance</term><term>Genes, Plant</term><term>Immunity, Innate</term><term>Plant Diseases</term><term>Seedlings</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Gènes de plante</term><term>Immunité innée</term><term>Maladies des plantes</term><term>Plant</term><term>Résistance à la maladie</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="immunologie" xml:lang="fr"><term>Immunité innée</term><term>Maladies des plantes</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="immunology" xml:lang="en"><term>Immunity, Innate</term><term>Plant Diseases</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Maladies des plantes</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Triticum</term></keywords><keywords scheme="MESH" qualifier="pathogenicity" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="pathogénicité" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Chromosome Mapping</term><term>Genome, Plant</term><term>Quantitative Trait Loci</term><term>Sequence Analysis</term><term>Transcriptome</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence</term><term>Cartographie chromosomique</term><term>Génome végétal</term><term>Locus de caractère quantitatif</term><term>Marqueurs génétiques</term><term>Transcriptome</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">Seedling and adult plant (field) resistance to yellow rust in the durum wheat (<i>Triticum turgidum</i> ssp. <i>durum</i>) cross Kunduru-1149 x Cham-1 was characterized using a functionally-targeted DNA marker system, NBS-profiling. Chi-squared analysis indicated a four gene model conferring seedling yellow rust resistance against <i>Puccinia striiformis</i> f. sp. <i>tritici</i> isolate WYR85/22 (virulent on <i>Yr2</i>, <i>Yr6</i>, <i>Yr7</i> and <i>Yr9</i>). Interval mapping located two QTL for yellow rust resistance on the long arm of chromosome 1B, while Kruskal-Wallis single marker regression identified a number of additional marker loci associated with seedling and/or adult plant, field resistance to yellow rust. These results suggested that much of the yellow rust resistance seen in the field may be due to seedling expressed resistance (R) genes. Characterization of the DNA sequence of three NBS marker loci indicated that all showed significant homology to functionally-characterized R-genes and resistance gene analogues (RGAs), with the greatest homology being NBS-LRR-type R-genes and RGAs from cereal species.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">31767816</PMID><DateCompleted><Year>2020</Year><Month>04</Month><Day>06</Day></DateCompleted><DateRevised><Year>2020</Year><Month>04</Month><Day>16</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Electronic">0973-7731</ISSN><JournalIssue CitedMedium="Internet"><Volume>98</Volume><PubDate><Year>2019</Year><Month>Nov</Month></PubDate></JournalIssue><Title>Journal of genetics</Title><ISOAbbreviation>J Genet</ISOAbbreviation></Journal><ArticleTitle>The utility of NBS-profiling for characterization of yellow rust resistance in an F<sub>6</sub> durum wheat population.</ArticleTitle><ELocationID EIdType="pii" ValidYN="Y">98</ELocationID><Abstract><AbstractText>Seedling and adult plant (field) resistance to yellow rust in the durum wheat (<i>Triticum turgidum</i> ssp. <i>durum</i>) cross Kunduru-1149 x Cham-1 was characterized using a functionally-targeted DNA marker system, NBS-profiling. Chi-squared analysis indicated a four gene model conferring seedling yellow rust resistance against <i>Puccinia striiformis</i> f. sp. <i>tritici</i> isolate WYR85/22 (virulent on <i>Yr2</i>, <i>Yr6</i>, <i>Yr7</i> and <i>Yr9</i>). Interval mapping located two QTL for yellow rust resistance on the long arm of chromosome 1B, while Kruskal-Wallis single marker regression identified a number of additional marker loci associated with seedling and/or adult plant, field resistance to yellow rust. These results suggested that much of the yellow rust resistance seen in the field may be due to seedling expressed resistance (R) genes. Characterization of the DNA sequence of three NBS marker loci indicated that all showed significant homology to functionally-characterized R-genes and resistance gene analogues (RGAs), with the greatest homology being NBS-LRR-type R-genes and RGAs from cereal species.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Tufan</LastName><ForeName>Hale A</ForeName><Initials>HA</Initials><AffiliationInfo><Affiliation>Department of Molecular Biology and Genetics, Bogazici University, 34342 Bebek, Istanbul, Turkey. belgingocmen@hotmail.com.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Taşkin</LastName><ForeName>Belgin Göçmen</ForeName><Initials>BG</Initials></Author><Author ValidYN="Y"><LastName>Maccormack</LastName><ForeName>Ruth</ForeName><Initials>R</Initials></Author><Author ValidYN="Y"><LastName>Boyd</LastName><ForeName>Lesley A</ForeName><Initials>LA</Initials></Author><Author ValidYN="Y"><LastName>Kaya</LastName><ForeName>Zeki</ForeName><Initials>Z</Initials></Author><Author ValidYN="Y"><LastName>Türet</LastName><ForeName>M</ForeName><Initials>M</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>India</Country><MedlineTA>J Genet</MedlineTA><NlmUniqueID>2985113R</NlmUniqueID><ISSNLinking>0022-1333</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D005819">Genetic Markers</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000472" MajorTopicYN="N">pathogenicity</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002874" MajorTopicYN="N">Chromosome 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MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000276" MajorTopicYN="N">immunology</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D040641" MajorTopicYN="N">Quantitative Trait Loci</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D036226" MajorTopicYN="N">Seedlings</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D017421" MajorTopicYN="N">Sequence Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D059467" MajorTopicYN="N">Transcriptome</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D014908" MajorTopicYN="N">Triticum</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000276" MajorTopicYN="Y">immunology</QualifierName><QualifierName UI="Q000382" 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Boyd</name><name sortKey="Kaya, Zeki" sort="Kaya, Zeki" uniqKey="Kaya Z" first="Zeki" last="Kaya">Zeki Kaya</name><name sortKey="Maccormack, Ruth" sort="Maccormack, Ruth" uniqKey="Maccormack R" first="Ruth" last="Maccormack">Ruth Maccormack</name><name sortKey="Ta Kin, Belgin Gocmen" sort="Ta Kin, Belgin Gocmen" uniqKey="Ta Kin B" first="Belgin Göçmen" last="Ta Kin">Belgin Göçmen Ta Kin</name><name sortKey="Turet, M" sort="Turet, M" uniqKey="Turet M" first="M" last="Türet">M. Türet</name></noCountry><country name="Turquie"><noRegion><name sortKey="Tufan, Hale A" sort="Tufan, Hale A" uniqKey="Tufan H" first="Hale A" last="Tufan">Hale A. Tufan</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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